Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015941751.1_cds_XP_016485506.1_76424
CDS Infomation

[gene=LOC107805917] [db_xref=GeneID:107805917] [protein=putative pentatricopeptide repeat-containing protein At1g56570] [protein_id=XP_016485506.1] [location=complement(join(8193..9410,9777..10391))] [gbkey=CDS]
Sequence

ATGAATGCAAGAAAACTAGTGTCCCAAACTCATTATACTCAAATTCCTCAAACTATCCGA
AACTCTCTTCTCTGTGCTGGAATCTGCCCGCCCTATTCAAACTCACCATTTTTACCAAAG
CCTCCTTCTATCTTAGCCACTGGCCTTCTCAAATTGTATTTTGAAAGGGGTCTCGTTAGA
GAAGCACGTACACTGTTCGATGAAATGCCCGAAAGAGACGTTGTTGCTTGGACGACCATG
ATTTCTGGGTACACTTCATGTAATCACCATGCACGTGCTTGGGTGGTTTTCTGTGAGATG
ATGAGGTATACGGATGTGCGCCCCAATGAGTTCACCTTTTCTAGCACGTTGAAGGCTTGT
AAAGGGATCAATTCGTCCTCTCGTGGAGCTTTGATTCATGGTTTGGTTCTTAAGCAAGGC
ATGAGTGTAAGTATTTATGTTGCGAATGCGCTCTTGGATGTCTATGCTACGTGTTGTGTT
AATATGGATGAAGCATCTGCGGTTTTTCATGAAATTAGAGTGAAAAATGATGTGTCTTGG
ACTACCTTAATCGCGGGATATACTCATCGTGGTGACGGCAATATGGGGCTTAAAGTTTTT
AGAAGAATGTTACTGGAAGAGGGTGAATCAAACCCATTTAGCTTTTCAATTGCAGTTAGA
GCTTGTGCCTCGGTCCATTCATGTATATACGGGAAGCAACTTCATGCTGCAATCATCAAG
CATGGCTTGGACTTTAATCTACCCGTAATGAATTCTATTTTAGATATGTATTGTAGGTCT
AGCAGCTTAACTGATGCAAAGCAATGCTTCCGTGAAATGACTCAAAGGGATTCAATTACG
TGGAACACTTTGATTGCTGGGTACGAGAAGTCTGATCCATATGAGTCTATCAGCATATAC
TCGAGTATGGAGTCTGAAGGTCTTAGCCCCAACTGCTTCACATTTTCCAGCGTTGTAGCA
GCTGTGGCCAATTTGGCAGTTTTGAGTTGTGGAGAGCAGATTCATGGAAGAATCATAAAG
AGAGGCCTTGGCGGGAACTTGGAGTTGGACAATGCCTTAATAGATATGTATGCAAAGTCT
GGAAACATTGCAAGTGCACGTAGAATTTTTGATGAAATGCCCAAGAAAAATCTGGTTTCA
TGGACCTCAATGATGATTGGTTATGGAAACCATGGTTACGGAAATGAAGCTGTTGACTTT
TTTGAAGAGATGGTTAAATTTAGAGTCAGGCCAGATAGAATAGCTTTTGTGGCAGTTTTA
AATGCATGTAGCCATGCTGGGCTTGTAGATAAAGGTTTAAGGTATTTTATCTCAATGGTT
GGTGATTACAACATAGCTCCAGATCAGGAGATTTTTGGGTGTTTAGTAGATTTGCTAGGA
CGTGCTGGAAGAGTTGAGGAGGCTTTTAAGTTGATAGAGAGTATGCCATTTGATCCTGAT
GAATCTGTTTGGGGAGCATTCCTGGGAGCATGTAAAGCACACAATCTTCCAGATTTGGGC
AAACTGGCCATGAAAAAGGTGTTGGCTTTTAAGCCGAAAATTGCAGGAACCTATGTGATT
TTGTCAAATATCTATGCAGCTGACGGTAAATGGGGTGACTCTGCGAAAATGAGGAAGTTG
ATGAGAAGGGTGGCTACTAAGAAAGAGGCTGGGAGAAGTTCAGTAGAGATAAAGAATCAG
AACTATAGTTTTGTTGCTGGAGATAAGATGGGTTCACATATGGACTGCGTTTATGAAGTT
GTAAATATCCTGGTTGAACACATGAGCGGCGTACGATATATTCCTGATTTTGACTTCTTT
ATACATGATTTTGAAGATGAACTTGAAAAGTAA

Peptide Sequence

PEP ID

XP_016485506.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Nicotiana tabacum]
Sequence

MNARKLVSQTHYTQIPQTIRNSLLCAGICPPYSNSPFLPKPPSILATGLLKLYFERGLVR
EARTLFDEMPERDVVAWTTMISGYTSCNHHARAWVVFCEMMRYTDVRPNEFTFSSTLKAC
KGINSSSRGALIHGLVLKQGMSVSIYVANALLDVYATCCVNMDEASAVFHEIRVKNDVSW
TTLIAGYTHRGDGNMGLKVFRRMLLEEGESNPFSFSIAVRACASVHSCIYGKQLHAAIIK
HGLDFNLPVMNSILDMYCRSSSLTDAKQCFREMTQRDSITWNTLIAGYEKSDPYESISIY
SSMESEGLSPNCFTFSSVVAAVANLAVLSCGEQIHGRIIKRGLGGNLELDNALIDMYAKS
GNIASARRIFDEMPKKNLVSWTSMMIGYGNHGYGNEAVDFFEEMVKFRVRPDRIAFVAVL
NACSHAGLVDKGLRYFISMVGDYNIAPDQEIFGCLVDLLGRAGRVEEAFKLIESMPFDPD
ESVWGAFLGACKAHNLPDLGKLAMKKVLAFKPKIAGTYVILSNIYAADGKWGDSAKMRKL
MRRVATKKEAGRSSVEIKNQNYSFVAGDKMGSHMDCVYEVVNILVEHMSGVRYIPDFDFF
IHDFEDELEK

Transcript Sequence

Gene sequence data has not been registered.